species:   Comil
pid:       PID1138
parent:    milR6
paralog:   
locus:     NW_006271969.1:4318423-4318569
matures:   ['AAUUGUUCCCUGAGCCAGCUGUCUG', 'GAGGCGGAUUCUUCAGCAAGUGG']
srr:       SRR8054058
genome:    /Users/jax/+Genomes/Fungal_genomes/Comil.GCF_000225605.1_CmilitarisCM01_v01_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Shao2019-xf.SRR8054058.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Shao2019-xf.SRR8054058.cram NW_006271969.1:4318423-4318569

0 out of bounds
9 alignments
5 proper strand
1 stranded perfect matches

        ****************************                                                                             **************************        
CAUUGGUGGCCCAAUUGUUCCCUGAGCCAGCUGUCUGAGCCUCCAGCUUGACGGGCGUCGUGCCGUCCAUGAAUCCCAUUGCAGGCAUGAUAAAGGCGCCCGCACUGUCGGCCGGAGGCGGAUUCUUCAGCAAGUGGGCUAGGUGUG
(((...(((((((.(((((....(((((.(((.((((.(((..(((..((.(((((((((((((..(.(((.....))).)..)))))......)))))))))))))..)))))))))))).)))...))))).)))))))...)))
------------AAUUGUUCCCUGAGCCAGCUGUCUG-------------------------------------------------------------------------------------------------------------- l=25 a=0 c
------------------------------------------------------------------------------------------------------------------GAGGCGGAUUCUUCAGCAAGUGG---------- l=23 a=0 c*
-------------------------------------------------------------------------------------------------------------------AGGCGGAUUCUUCAGCAAGUGGGC-------- l=24 a=1 ma
----------CCAAUUGUUCCCUGAGCCAGCUGUCU--------------------------------------------------------------------------------------------------------------- l=26 a=0 ma*

-------------------------------------------------------------------------------------------------------------------AGGCGGAUUCUUCAGCAAGUGGa--------- l=23 a=1 
-------------------------------------------------------------------------------------------------------------------AGGCGGAUUCUUCAGCAAGUGGGC-------- l=24 a=1 (ma)
----------------------------------------CUCCAGCUUGACGGGCGUCGUa------------------------------------------------------------------------------------- l=22 a=1 
------UGGCCCAAcUGUUCCCUGA-------------------------------------------------------------------------------------------------------------------------- l=19 a=1 
----GGUGGCCCAAUUGUUCCCUGAaC------------------------------------------------------------------------------------------------------------------------ l=23 a=1 

mb-01011
ax-1001011
ku-01
ss-100110101100
fn-001
